Template:Taxon

var offsetVal = 0;
var limitVal = 20;
var totalVal; 
var taxonID = $("#taxonid").val();
function tableDraw() {	

        
        var prefixStr = "PREFIX owl:<http://www.w3.org/2002/07/owl#> PREFIX mind:<http://mindtouch.com/schema#> PREFIX core:<http://purl.uniprot.org/core/>";
	    
	var selectStr = "select * where { ?page mind:pageID ?pageID . ?page mind:pagePath ?path . ?page owl:sameAs ?link . ?link core:organism <http://purl.uniprot.org/taxonomy/" + taxonID + "> . OPTIONAL { ?link core:encodedBy ?gene . ?gene core:locusName ?locus . } OPTIONAL { ?link core:mnemonic ?mnemonic } } GROUP BY ?page ";

	var queryStr = prefixStr + " " + selectStr + " LIMIT " + limitVal + " OFFSET " + offsetVal;
	$.get( '/@api/deki/site/services/=note/proxy/sparql', { 'format' : 'json', 'query' : queryStr },
		function (data) {
			var table = $("#table");
			table.empty();
                        table.append("<tr><td>TOPSAN Page</td><td>UNIPROT Page</td><td></td><td>Mnemonic</td></tr>");
			for ( var row in data["results"]["bindings"] ) {                             
                             var uri = data.results.bindings[row].path.value;
                             var li = uri.lastIndexOf("/");
                             var pdbid = uri.substr(li+1, uri.length-(li+1));
                             var pathflag = uri.indexOf("Proteins");
                             
                             var link = data.results.bindings[row].link.value;
                             var locus = data.results.bindings[row].locus != null ? data.results.bindings[row].locus.value : "" ;
                             var mnemonic = data.results.bindings[row].mnemonic.value;

                             var urlstr = "";
                             if (pathflag != -1 && pdbid.length == 4)
                             {
                                var imageurl = "http://www.rcsb.org/pdb/images/" + pdbid + "_bio_r_250.jpg?bioNum=1";
                                urlstr = "<div style=\"width: 100px;\"><a href=\"http://www.topsan.org/" + uri + "\" title = \"" + uri + "\"><img style=\"image-orientation: 90deg\" width=\"100px\" src=\"" + imageurl + "\" title=\"args.pdbid\"/></a></div>";
                             }
                             else 
                             {
                                urlstr = "<div style=\"width: 100px; height: 40px;\"><a href=\"http://www.topsan.org/" + uri + "\">" + uri + "</a></div>";
                             }
                             table.append( "<tr valign=\"top\"><td>" + urlstr + "</td><td>" +
                                   "<a href=\"" + link + "\">" + link + "</a></td><td>" +
                                   "</td><td>" +
                                   mnemonic + "</td></tr>" );
                        }

			var tableLabel = $("#tableLabel");
			tableLabel.empty();
                        var spanVal = offsetVal + limitVal;
			tableLabel.append( " " + (offsetVal+1) + "-" + spanVal + " " );
		}
	);
};

function scrollUp() {
	offsetVal -= limitVal;
	if ( offsetVal < 0 ) {
		offsetVal = 0;
	}
	tableDraw();
}

function scrollDown() {
	offsetVal += limitVal;
	tableDraw();
}

$(document).ready( tableDraw );

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