Table of contents
No headers
{{ wiki.template("ProteinSectionEditing", nil, "jewlSectionEditing") }}
| Title | {{ args.title; if(args.pubmed && args.pubmed != "") { var abstract = web.html(uri.build('http://www.ncbi.nlm.nih.gov/pubmed/'..string.cast(args.pubmed)), "//_:div[@class='abstract_text']"); if (abstract) {pubmed.widget(uri.build('http://www.ncbi.nlm.nih.gov/pubmed/'..args.pubmed, _, { dopt: 'Abstract' }), 'pubmed', 'http://www.topsan.org/@api/deki/files/7070/=pubmed.PNG', abstract); }} }} | | Site | {{ args.site }} | Biology Target: | {{ Template.bclist{bc:bcparams} }} | | Status | {{ args.status }} | | PDB Id | | Target Id | {{ note.link('alias', args.targetid) }} | | Related PDB Ids {{rpdb}} | | Molecular Characteristics | | Source | {{ note.link('organism', args.source) }}{{note.link( 'member', 'http://topsan.org/Taxonomy/'..String.replace(args.source, ' ', '_'), false) }} | | Alias Ids | {{ note.link('alias', nameAlias, false) }}{{'TPS'..page.id}},{{args.refids}} | Molecular Weight | {{ note.link( 'molecularWeight', args.molwt) }} Da. | | Residues | {{ note.link('residueCount', args.residues) }} | Isoelectric Point | {{ note.link( 'isoelectricPoint', args.isopoint) }} | | Sequence | {{ note.link( 'value', args.sequence) }} | | | {{web.link('http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=(none)&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&HITLIST_SIZE=500&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&QUERY='..String.replace(args.sequence, ' ', ''), 'BLAST', 'BLAST', '_blank');}} {{web.link('http://ffas.burnham.org/ffas-cgi/cgi/ffas.pl?seq='..String.replace(args.sequence, ' ', ''), 'FFAS', '', '_blank'); }} | {{template.Structure{ method:args.method, numchains:args.numchains, resolution:args.resolution, rfree:args.rfree, mattcoeff:args.mattcoeff, rfactor:args.rfactor, waters:args.waters, solcontent:args.solcontent } }} {{ template.Pathway{tmid:tmlist} }} | Ligand Information | | Ligands | {{args.ligands}} | | Metals | {{ args.metals }} | | | {{structure.image(args.pdbId)}} | | {{jmol.image(args.pdbId, args.model)}} | Modeled{{ web.image("http://files.topsan.org/images/"..tmlist[0]..".png") }}
{{web.link('http://ffas.burnham.org/protmod-cgi/tmModels.pl?type=id&id='..tmlist[0], 'Model '..tmlist[0], 'Model '..tmlist[0], '_blank'); }}
{{ web.link('http://ffas.burnham.org/protmod-cgi/tmModels.pl', 'generated 12/2008', 'models', '_blank'); }} | Transmembrane protein{{ web.image("http://files.topsan.org/images/"..tmlist[0]..".png", "215", "200") }}
{{web.link('http://files.topsan.org/TMHMM/'..tm, 'HMM_'..tm, 'HMM_'..tm, '_blank'); }} | | {{template.PDBCompare{pdbid: args.pdbId} }} | | {{protein.resources(args.pdbid, args.sequence)}} | | |
{{note.link( "type", "CORE:Protein", false) }}
if ( args.uniprot != nil && args.uniprot != '' ) {
note.link( "sameAs", "UNIPROT:"..args.uniprot, false);
note.import( 'uniprot:'..args.uniprot );
}
if ( args.pdbid != '' && args.pdbid != nil) {
note.import( 'pdb:'..string.toupper(args.pdbid) );
note.link("alias",string.toupper(args.pdbid),false);
note.link( "sameAs", "PDB:"..string.toupper(args.pdbid), false);
}
if ( args.pubmed != '' && args.pubmed != nil) {
note.link( "citation", "PMID:"..args.pubmed, false);
}
var tags = page.tags;
foreach (var tm in tmlist){
if (tm != '') {
note.link("sameAs", "http://cmr.jcvi.org/tigr-scripts/CMR/shared/GenePage.cgi?locus="..tm, false);
}
}
foreach(var tag in tags)
{
note.link("seeAlso", "http://purl.topsan.org/Groups/"..String.replace( tag["name"], " ", "_"), false);
}
