.
The Open Protein Structure Annotation Network
PDB Keyword
.

2ash

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References
    Title Crystal structure of Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (tRNA-guanine (tm1561) from THERMOTOGA MARITIMA at 1.90 A resolution. To be published
    Site JCSG
    PDB Id 2ash Target Id 283418
    Molecular Characteristics
    Source Thermotoga maritima msb8
    Alias Ids TPS1300,TM1561 Molecular Weight 41426.68 Da.
    Residues 369 Isoelectric Point 6.39
    Sequence mefevkktfgkarlgvmklhhgavetpvfmpvgtnasvklltprdleeagaeiilsntfhlmlkpgvei iklhrglhnfmgwkrpiltdsggfqvfslpkiriddegvvfrspidgskvflnpeismevqialgsdic mvfdhcpvpdadyeevkeatertyrwalrskkafktenqalfgivqggiypdlrresalqltsigfdgy aigglsigeersltlemtevtveflpedkpryfmgggspelilelvdrgvdmfdsvfptriarhgtalt wngklnlkasynkrslepvdercgcytcknftrsyihhlfdrgevlgqilltihninfmislmkevrrs iesgtfkelkskvvevyssggvnv
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 4
    Resolution (Å) 1.90 Rfree 0.229
    Matthews' coefficent 2.62 Rfactor 0.193
    Waters 655 Solvent Content 52.66

    Ligand Information
    Ligands
    Metals

    Jmol

     

    Protein Summary

    The gene TM1561 from Thermotoga maritima encodes an enzyme queuine tRNA-ribosyltransferase PF01702 COG1549 EC:2.4.2.29.  Some other common names of this enzyme are tRNA-guanine transferase, tRNA guanine transglycosylase, guanine-tRNA transglycosylase, queuine-tRNA transglycosylase, q-insertase.  Queuine is a hypermodified base that occurs in the wobble position of the anticodon of tRNAs of Asp, Asn, His and Tyr .  Queuine tRNA-ribosyltransferase catalyzes the incorporation of queuine into tRNA via a base exchange reaction with guanine.  In eukaryotes, queuine is directly exchanged into tRNA while in eubacteria, a queuine precursor (preQ1) is incorporated and ultimately modified to queuine [Ref].  The enzyme contains a zinc-binding motif.  To date, structures of the enzyme homologues from multiple organisms have been solved (e.g. 1EFZZymomonas mobilis; 1IT8Pyrococcus horikoshii).

    Ligand Summary



    References

    Reviews

    References

     

    1. Phillips G, El Yacoubi B, Lyons B, Alvarez S, Iwata-Reuyl D, and de Cr茅cy-Lagard V Biosynthesis of 7-deazaguanosine-modified tRNA nucleosides: a new role for GTP cyclohydrolase I. J Bacteriol. 2008 Dec; 190(24):7876-84 PubMed HubMed doi:10.1128/JB.00874-08 pmid:18931107.

       


      Discuss this publication
    Tag page

    Files (0)

     
    You must login to post a comment.
    All content on this site is licensed under a Creative Commons Attribution 3.0 License
    Powered by MindTouch