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1vmb

    Table of contents
    1. 1. Protein Summary
    2. 2. Ligand Summary
    3. 3. References

    Title Crystal structure of 30S ribosomal protein S6 (TM0603) from Thermotoga maritima at 1.70 A resolution. To be published
    Site JCSG
    PDB Id 1vmb Target Id 282476
    Molecular Characteristics
    Source Thermotoga maritima msb8
    Alias Ids TPS1219,TM0603, 89397 Molecular Weight 15368.73 Da.
    Residues 128 Isoelectric Point 5.81
    Sequence mayvkeriyesmfiiapnvpeeerenlvervkkiieervkgkidkvermgmrkfayeikkfnegdytvi yfrcdgqnlqelenfyrvtpeiirwqtfrrfdlekkerkaqrekaaaeatesseggsed
      BLAST   FFAS

    Structure Determination
    Method XRAY Chains 1
    Resolution (Å) 1.70 Rfree 0.23735
    Matthews' coefficent 2.37 Rfactor 0.18287
    Waters 116 Solvent Content 47.67

    Ligand Information
    Ligands
    Metals

    Jmol

     
    Google Scholar output for 1vmb
    1. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches
    R Schwarzenbacher, A Godzik - Section D: Biological , 2007 - scripts.iucr.org
     
    2. Crystal structure of the DUF54 family protein PH1010 from hyperthermophilic archaea Pyrococcus horikoshii OT3
    K Miyazono, M Shirokane, Y Sawano - Proteins: Structure, , 2009 - Wiley Online Library
     

    Protein Summary

    The TM0603 from Thermotoga maritima encodes the 30S ribosomal protein S6 (PF01250, COG0360). The TM0603 structure adopts a ferredoxin-like fold  and shows significant similarity (main-chain rmsd of 1.4 Å over 95 residues with a sequence identity of 21%) with the 30S ribosomal protein S6 from another hyperthermophile, Thermus thermophilus (PDB ids: 1hnw, 1hnz, 1j53, 2hhh, 2uub, 3f1g). Similar results were obtained for homologs from Staphylococcus epidermis (PDB id: 3fle) and Escherichia coli (PDB ids: 1g1x, 2gy9). For more details on the assembly, structure and functions of the 30S ribosomal subunit see Agalarov 2000, Brodersen 2000, Brodersen 2002 and Korostelev 2008.

    Ligand Summary



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