PF09351
Table of contents
- 1. Topsan Members
- 2. Summary
| Pfam Family | |
|---|---|
| Name: DUF1993 | Accession: PF09351 (PFAM live) |
| Description | |
| Domain of unknown function (DUF1993) | |
| Comments | |
| This family of proteins are functionally uncharacterised. | |
| Resources | |||
|---|---|---|---|
| Pfam ID: | DUF1993 | PDB: | 2oqm |
| Solved by: | JCSG | Priority Score: | 2.6 |
| Member of this family is in PDB. | |||
| Member of this clan is in PDB. | |||
| HMMER: | |||
| # sequence matches: 297 | # architectures: 4 | # taxonomy ids:155 | |
| FFAS: | |||
| Top FFAS hit in PDB: | "2oqmA, Hypothetical protein" | Top FFAS hit in Pfam: | "PF05163, DinB family " |
| GRDB: | |||
| Top significant hit (PDB90): | "2oqmA, structural genomics, unknown function ; crystal structure of hypothetical protein (yp_561575.1) from shewanella denitrificans os-217 at 1.83 a resolution " | ||
| Top significant hit (PFAM25U): | "PF05163, DinB family" | ||
| CATH: | CATH Domain | E-value | CATH Node |
| 2oqmB01 | 6.60E-65 | 1.20.120.450 | |
Topsan Members
Tag pages as 'PF09351' to appear in this list.
| Name | Annotation | Author(s) |
2oqm
| Gene Sden_0562 from Shewanella denitrificans os-217 encodes the YP_561575 protein from the DUF1993 group (PF09351). SCOP classifies 2oqm in the all alpha class, DinB/YfiT-like putative metalloenzyme... | pascual (3 edits) agb (1 edits) chrisx (1 edits) |
Summary
Pfam family PFAM:PF09351 {Domain of unknown function (DUF1993) } with 255 members in NR database and additional 147 members in the metagenomic datasets is represented in Bacteria, and Eukaryota. The first structural representative solved (PDB Id: TOPSAN:2oqm) was subject to FATCAT structural similarity search that indicated similarity to SCOP (v. 1.73) domain SCOP:d1rxqa_ classified as Dinb/yfit-like putative metalloenzymes fold. (Note: new fold solved by PSI). Profile-profile methods confirm remote homology between this family and superfamily of Dinb/yfit-like putative metalloenzymes; fold of the same name. Based on remote homology confirmed by the structure one can hypothesize that this family is probably binds nucleic acids, possibily damage inducible proteinsReviews
References
No references found.
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